Variable Feature Value Coefficient N N.not.0 P.value Q.value after_abx p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Dorea_s__Dorea_formicigenerans after_abx TRUE -0.00844284369211848 628 196 0.00167082592495281 0.0855254020335218 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Subdoligranulum_s__Subdoligranulum_unclassified age_at_collection 0.000115203619603018 628 534 2.37639949341876e-19 5.28181111638798e-16 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Faecalibacterium_s__Faecalibacterium_prausnitzii age_at_collection 0.000203992156965485 628 468 2.57963912888302e-19 5.28181111638798e-16 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Rikenellaceae_g__Alistipes_s__Alistipes_putredinis age_at_collection 0.000100512989485306 628 133 4.86622107770515e-19 6.64239177106753e-16 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Oscillospiraceae_g__Oscillibacter_s__Oscillibacter_unclassified age_at_collection 5.94134942547642e-05 628 294 1.00626219213067e-18 1.03016091919377e-15 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__Clostridium_s__Clostridium_symbiosum age_at_collection 1.87771008768529e-05 628 218 1.30766239509442e-18 1.07097550158233e-15 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Rikenellaceae_g__Alistipes_s__Alistipes_onderdonkii age_at_collection 6.69582878390576e-05 628 225 4.66033932717897e-17 2.98045108242576e-14 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Eubacteriaceae_g__Eubacterium_s__Eubacterium_rectale age_at_collection 0.000176383100543142 628 353 5.09478817508676e-17 2.98045108242576e-14 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_lactaris age_at_collection 4.81066860274253e-05 628 178 8.52078836454363e-17 4.36157854410077e-14 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae_g__Barnesiella_s__Barnesiella_intestinihominis age_at_collection 8.55434309543699e-05 628 124 1.02023511021503e-16 4.64206975147839e-14 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Blautia_s__Ruminococcus_obeum age_at_collection 2.52569359305568e-05 628 376 8.76928887160381e-15 3.59102379292176e-12 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Eubacteriaceae_g__Eubacterium_s__Eubacterium_hallii age_at_collection 3.92327839455386e-05 628 277 4.80471236757369e-14 1.78866337683766e-11 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Dorea_s__Dorea_formicigenerans age_at_collection 2.15002972642239e-05 628 196 1.27407026031609e-13 4.34776476332865e-11 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Anaerostipes_s__Anaerostipes_hadrus age_at_collection 2.28772104764473e-05 628 346 5.28286149041982e-13 1.66410136948224e-10 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Rikenellaceae_g__Alistipes_s__Alistipes_shahii age_at_collection 5.5676700068819e-05 628 110 9.50257749782151e-13 2.77950391811279e-10 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidales_noname_g__Bacteroidales_noname_s__Bacteroidales_bacterium_ph8 age_at_collection 3.62943532144855e-05 628 71 1.04680466120178e-12 2.85777672508087e-10 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Rikenellaceae_g__Alistipes_s__Alistipes_finegoldii age_at_collection 4.31045468029681e-05 628 209 1.75624226423959e-12 4.49488254503819e-10 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia_s__Roseburia_hominis age_at_collection 2.69317522383196e-05 628 236 1.95030651367996e-12 4.69794421971731e-10 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospiraceae_noname_s__Lachnospiraceae_bacterium_3_1_46FAA age_at_collection 2.13368572522633e-05 628 154 1.58164616342214e-11 3.59824502178537e-09 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__Clostridium_s__Clostridium_citroniae age_at_collection 6.44677855253162e-06 628 161 1.67737442496783e-11 3.61518330012804e-09 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_bromii age_at_collection 7.53686593848174e-05 628 270 2.11010782509884e-11 4.32044577188987e-09 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Eubacteriaceae_g__Eubacterium_s__Eubacterium_ramulus age_at_collection 1.71671718257771e-05 628 102 5.95357942305019e-11 1.16094798749479e-08 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospiraceae_noname_s__Lachnospiraceae_bacterium_5_1_63FAA age_at_collection 2.58639692348185e-05 628 380 2.11216245834193e-10 3.9315023940501e-08 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Eubacteriaceae_g__Eubacterium_s__Eubacterium_ventriosum age_at_collection 1.59940183668945e-05 628 92 2.69073188698207e-10 4.79067264225721e-08 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Dorea_s__Dorea_longicatena age_at_collection 2.70939344559242e-05 628 236 4.42906643956677e-09 7.5570946125108e-07 age_at_collection p__Firmicutes_c__Negativicutes_o__Selenomonadales_f__Veillonellaceae_g__Dialister_s__Dialister_invisus age_at_collection 6.04038544409823e-05 628 250 1.4795355337258e-08 2.33026846561813e-06 age_at_collection p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Klebsiella_s__Klebsiella_unclassified age_at_collection -6.28184668303359e-06 628 187 7.1733643445387e-08 9.79164233029533e-06 age_at_collection p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila_s__Bilophila_unclassified age_at_collection 2.04145258061388e-05 628 167 1.52816824425798e-07 1.95557780007388e-05 age_at_collection p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Streptococcus_s__Streptococcus_mitis_oralis_pneumoniae age_at_collection -6.24075195933554e-06 628 225 3.57963764283286e-07 4.44200489315169e-05 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Roseburia_s__Roseburia_intestinalis age_at_collection 7.28829513557156e-05 628 330 4.14019580746491e-07 4.9865005386967e-05 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Blautia_s__Ruminococcus_gnavus age_at_collection -7.72564482100474e-05 628 533 8.94450578205596e-07 9.89939221014031e-05 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospiraceae_noname_s__Lachnospiraceae_bacterium_8_1_57FAA age_at_collection 9.29722616418953e-06 628 168 9.5803064719587e-07 0.000103240407901765 age_at_collection p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Streptococcus_s__Streptococcus_parasanguinis age_at_collection -9.3543515940331e-06 628 252 1.24721581347782e-06 0.000130957660415171 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Coprococcus_s__Coprococcus_comes age_at_collection 1.83052881286083e-05 628 129 1.40008344610444e-06 0.000143333542794942 age_at_collection p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Enterococcaceae_g__Enterococcus_s__Enterococcus_faecalis age_at_collection -3.37035877937881e-05 628 127 2.12774326656102e-06 0.000212514845769936 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides_s__Bacteroides_uniformis age_at_collection 0.000153357606138018 628 491 3.97681386703329e-06 0.000378722157802356 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Lachnospiraceae_noname_s__Lachnospiraceae_bacterium_7_1_58FAA age_at_collection 1.01272198955095e-05 628 279 5.67907845039586e-06 0.000516796138986023 age_at_collection p__Firmicutes_c__Erysipelotrichia_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Coprobacillus_s__Coprobacillus_unclassified age_at_collection -2.34927229745952e-05 628 399 3.20056937698554e-05 0.00269517189550638 age_at_collection p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Pantoea_s__Pantoea_unclassified age_at_collection -5.73667002607563e-06 628 91 3.22499201171704e-05 0.00269517189550638 age_at_collection p__Verrucomicrobia_c__Verrucomicrobiae_o__Verrucomicrobiales_f__Verrucomicrobiaceae_g__Akkermansia_s__Akkermansia_muciniphila age_at_collection 5.38809935991608e-05 628 388 3.36131040968442e-05 0.00275291322553154 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Anaerotruncus_s__Anaerotruncus_colihominis age_at_collection 7.1366474258021e-06 628 140 3.85019595515685e-05 0.00302211219794793 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides_s__Bacteroides_caccae age_at_collection 7.6593125090065e-05 628 246 9.30821958161675e-05 0.00657192399771044 age_at_collection p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_sp_5_1_39BFAA age_at_collection 3.51823255125454e-05 628 122 0.000150651685329082 0.0104562483291964 age_at_collection p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Escherichia_s__Escherichia_unclassified age_at_collection -2.06566176396768e-05 628 397 0.000203042484392334 0.0137280782853208 age_at_collection p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Lactobacillaceae_g__Lactobacillus_s__Lactobacillus_rhamnosus age_at_collection -2.70324453438916e-05 628 131 0.000438742505218904 0.026421331748109 age_at_collection p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Escherichia_s__Escherichia_coli age_at_collection -7.22494862780074e-05 628 543 0.000522102670142097 0.0305589190774831 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Bacteroidaceae_g__Bacteroides_s__Bacteroides_xylanisolvens age_at_collection 3.0314071183903e-05 628 184 0.00114284708821317 0.0623994510164392 age_at_collection p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Klebsiella_s__Klebsiella_pneumoniae age_at_collection -5.12775963333728e-05 628 110 0.00134767269415102 0.0707528164429287 age_at_collection p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae_g__Parabacteroides_s__Parabacteroides_distasonis age_at_collection 2.04938629204144e-05 628 289 0.00165018655813236 0.0855254020335218 allergy_cat p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_sp_5_1_39BFAA allergy_cat TRUE 0.0538122980696743 628 122 0.000255199289970495 0.0165879538480822 allergy_dog p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_sp_5_1_39BFAA allergy_dog TRUE -0.0490234961074747 628 122 0.000979331605857082 0.0549364784381473 allergy_dog p__Actinobacteria_c__Actinobacteria_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella_s__Eggerthella_unclassified allergy_dog TRUE -0.0192916360889509 628 415 0.00123963676515229 0.0659261370558262 allergy_dustmite p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Prevotellaceae_g__Prevotella_s__Prevotella_copri allergy_dustmite TRUE 0.261338061445853 628 187 1.18920334264573e-08 1.94791507525371e-06 allergy_dustmite p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Citrobacter_s__Citrobacter_freundii allergy_dustmite TRUE 0.0289152183553521 628 80 0.000859896746072745 0.0495954531713787 allergy_egg p__Actinobacteria_c__Actinobacteria_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella_s__Eggerthella_unclassified allergy_egg TRUE 0.0130900986746413 628 415 8.96418162025243e-08 1.18413947532044e-05 allergy_egg p__Firmicutes_c__Erysipelotrichia_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Coprobacillus_s__Coprobacillus_unclassified allergy_egg TRUE 0.01511856151341 628 399 5.07058027834244e-06 0.000471909687268461 allergy_peanut p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila_s__Bilophila_unclassified allergy_peanut TRUE 0.0262524292739882 628 167 3.95889746560813e-05 0.00302211219794793 allergy_peanut p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_lactaris allergy_peanut TRUE 0.035293144062574 628 178 0.000522374685085182 0.0305589190774831 allergy_peanut p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Sutterellaceae_g__Parasutterella_s__Parasutterella_excrementihominis allergy_peanut TRUE 0.0228053632658218 628 107 0.00110458012821213 0.0611250760139008 allergy_peanut p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__Porphyromonadaceae_g__Barnesiella_s__Barnesiella_intestinihominis allergy_peanut TRUE 0.0531716231114393 628 124 0.00201092693036246 0.0968793621156975 allergy_timothy p__Firmicutes_c__Clostridia_o__Clostridiales_f__Ruminococcaceae_g__Ruminococcus_s__Ruminococcus_lactaris allergy_timothy TRUE -0.0498599407427898 628 178 8.36423870144732e-05 0.00600904517235557 Barley p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__Clostridium_s__Clostridium_bolteae Barley TRUE 0.0106199302946692 628 317 3.00317190086145e-08 4.44646737492722e-06 Breast_feeding_end p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__Clostridium_s__Clostridium_clostridioforme Breast_feeding_end TRUE 0.0090124157457359 628 174 0.00179546829785723 0.0885836467436789 country p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Lactococcus_s__Lactococcus_lactis countryRUS 0.0483625911476792 628 167 2.01725443884092e-08 5.69700477727833e-06 country p__Actinobacteria_c__Actinobacteria_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella_s__Eggerthella_lenta countryRUS 0.00472062657659977 628 242 1.31500302836271e-06 0.000256425590530728 country p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Lactobacillaceae_g__Lactobacillus_s__Lactobacillus_casei_paracasei countryRUS 0.0337393250340058 628 96 5.12344339066918e-06 0.000912195681947404 country p__Actinobacteria_c__Actinobacteria_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella_s__Eggerthella_unclassified countryRUS 0.0113870170712101 628 415 1.99260144919644e-05 0.00302211219794793 country p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae_g__Bifidobacterium_s__Bifidobacterium_dentium countryRUS 0.0234724575731755 628 148 0.000123320698152407 0.0162902664172292 country p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae_g__Bifidobacterium_s__Bifidobacterium_breve countryFIN 0.00666532355515371 628 427 0.000184125740012232 0.0229609396772839 country p__Actinobacteria_c__Actinobacteria_o__Coriobacteriales_f__Coriobacteriaceae_g__Collinsella_s__Collinsella_aerofaciens countryFIN -0.0192044294585223 628 281 0.000488955869981093 0.0549364784381473 country p__Proteobacteria_c__Gammaproteobacteria_o__Pasteurellales_f__Pasteurellaceae_g__Actinobacillus_s__Actinobacillus_unclassified countryFIN 0.00176040821404063 628 127 0.000892259030303837 0.0885836467436789 delivery p__Firmicutes_c__Clostridia_o__Clostridiales_f__Peptostreptococcaceae_g__Peptostreptococcaceae_noname_s__Clostridium_bartlettii deliveryvaginal -0.0118982100024558 628 383 6.37260057439649e-05 0.00465996417002744 delivery p__Actinobacteria_c__Actinobacteria_o__Coriobacteriales_f__Coriobacteriaceae_g__Eggerthella_s__Eggerthella_lenta deliveryvaginal -0.00421512152089648 628 242 0.00121683242856639 0.0655648525655179 delivery p__Firmicutes_c__Erysipelotrichia_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Coprobacillus_s__Coprobacillus_unclassified deliveryvaginal -0.0146675570192531 628 399 0.00178979066588334 0.0885836467436789 Eggs p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Streptococcus_s__Streptococcus_salivarius Eggs TRUE 0.00890860362442559 628 363 3.04031957259981e-08 4.44646737492722e-06 Eggs p__Firmicutes_c__Clostridia_o__Clostridiales_f__Lachnospiraceae_g__Blautia_s__Ruminococcus_torques Eggs TRUE 0.0207680771163018 628 526 8.08575321404186e-07 9.19754428097262e-05 Meat p__Firmicutes_c__Erysipelotrichia_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Erysipelotrichaceae_noname_s__Erysipelotrichaceae_bacterium_2_2_44A Meat TRUE 0.00286315728169423 628 187 6.76703299955871e-07 7.9174286094837e-05 mgx_reads_filtered p__Proteobacteria_c__Gammaproteobacteria_o__Enterobacteriales_f__Enterobacteriaceae_g__Escherichia_s__Escherichia_unclassified mgx_reads_filtered -0.000465763361793932 628 397 0.000204496404250201 0.0137280782853208 Milk p__Firmicutes_c__Bacilli_o__Lactobacillales_f__Streptococcaceae_g__Lactococcus_s__Lactococcus_lactis Milk TRUE 0.0283052914767733 628 167 0.000292160769003216 0.0186937242041901 Soy p__Firmicutes_c__Clostridia_o__Clostridiales_f__Clostridiaceae_g__Clostridium_s__Clostridium_clostridioforme Soy TRUE 0.0159975240366958 628 174 0.000370066427033147 0.0229609396772839 Soy p__Firmicutes_c__Erysipelotrichia_o__Erysipelotrichales_f__Erysipelotrichaceae_g__Erysipelotrichaceae_noname_s__Clostridium_innocuum Soy TRUE 0.00651337754078736 628 119 0.000424981713020988 0.0259746285794171 Soy p__Proteobacteria_c__Betaproteobacteria_o__Burkholderiales_f__Sutterellaceae_g__Parasutterella_s__Parasutterella_excrementihominis Soy TRUE 0.0132240944289199 628 107 0.0018347558230089 0.0894443463716836 totalige_log p__Actinobacteria_c__Actinobacteria_o__Bifidobacteriales_f__Bifidobacteriaceae_g__Bifidobacterium_s__Bifidobacterium_pseudocatenulatum totalige_log -0.0146975698298672 628 246 3.78352886973448e-05 0.00302211219794793 totalige_log p__Proteobacteria_c__Deltaproteobacteria_o__Desulfovibrionales_f__Desulfovibrionaceae_g__Bilophila_s__Bilophila_wadsworthia totalige_log 0.00217142906718023 628 120 4.95236584864113e-05 0.00368726148185189 Wheat p__Firmicutes_c__Clostridia_o__Clostridiales_f__Peptostreptococcaceae_g__Peptostreptococcaceae_noname_s__Clostridium_bartlettii Wheat TRUE 0.00822623531993666 628 383 1.15582846903407e-05 0.00100704629376479